PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043551t1
Common NameTCM_043551
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 323aa    MW: 35936.1 Da    PI: 6.8869
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043551t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.42.1e-1446139187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                       +W++    +L+ea++e+ ++l+rg     +Weev++++             ++++  +s +qCk+k++nl+kryk + ++ +++  + ss++ 
  Thecc1EG043551t1  46 EWSDTALACLLEAYTEKFNQLNRG----RDWEEVAEALserraggadedrgEKQKTGKSVEQCKNKIDNLKKRYKVELQRISGG--GGSSHWH 132
                       5**********************9....89*******************99999999******************999999986..78889** PP

          trihelix  81 yfdqlea 87 
                       +f+q+ea
  Thecc1EG043551t1 133 WFKQMEA 139
                       *****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1745140No hitNo description
SuperFamilySSF536334.19E-14236312IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.105.1E-15236312IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016310Biological Processphosphorylation
GO:0016301Molecular Functionkinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSCHENFSLI HPHAPPALPS KNSISLLRTP TTIKKPEPEY RKDSEEWSDT ALACLLEAYT  60
EKFNQLNRGR DWEEVAEALS ERRAGGADED RGEKQKTGKS VEQCKNKIDN LKKRYKVELQ  120
RISGGGGSSH WHWFKQMEAI MGNLGSCSSG RGLEGEDRSG LSNLGKQATK SYLVLLCCRR  180
SPSPTAGHEP SNILRKEKSS FVWWHWGWHW ESSLYSRHSS SSESFRDCRH SMSGALLKGA  240
NGDGVYDCHS DNGSVALDRI SFREVVSSGF TSMDMMAITY CEENGIPVVV FNLLEPGNIS  300
RALCGERVGT SIDQQGRDES EL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007010175.10.0Aspartate/glutamate/uridylate kinase family protein, putative
TrEMBLA0A061FNS20.0A0A061FNS2_THECC; Aspartate/glutamate/uridylate kinase family protein, putative
STRINGVIT_13s0074g00240.t012e-41(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2300244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-36Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]